Desnudos Hombres - Spartacus

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Desnudos Hombres - Spartacus

Despite their victories, the rebellion ultimately faced a tragic end. Spartacus was killed in battle against the Roman legions led by Marcus Licinius Crassus in 71 BCE. According to historical accounts, Spartacus's body was never found, and his death symbolized the brutal suppression of the slave uprising.

The mention of "desnudos hombres" (naked men) seems to refer to the conditions under which Spartacus and his fellow gladiators lived and fought, stripped of their dignity and basic human rights, yet still managing to inspire one of the most significant slave uprisings in ancient history. Spartacus desnudos hombres

The story of Spartacus has endured through the centuries, symbolizing resistance against oppression, the fight for freedom, and the human desire for dignity and equality. Spartacus and his fellow rebels may not have achieved their immediate goal of freedom, but their actions inspired future generations and left an indelible mark on history. Despite their victories, the rebellion ultimately faced a

One day, Spartacus and a group of about 70 fellow gladiators, mostly Thracians and Gauls, decided they had had enough of their enslavement. They overpowered their guards, seized weapons, and made a daring escape from the Ludus of Capua, a gladiatorial training school. The mention of "desnudos hombres" (naked men) seems

One of the most famous episodes of the Spartacus uprising was the Battle against Crassus, one of Rome's wealthiest men, who had been tasked with defeating Spartacus. To prevent Spartacus and his army from escaping, Crassus built a fortified wall across the isthmus of Bruttium (modern Calabria), effectively trapping them.

Program Components and Older Versions

homer2 program - key executable for HOMER motif discovery (homerCppOnly.*.zip). (This archive actually contains all of the c++ executable, not just homer2). Unzip in the desired directory and simply type "make" to compile the program.

The configuration script really doesn't deal with older versions, but you can download older versions yourself should you really feel like using inferior data or software!

Old Versions of HOMER Software
Old Versions of Organism Packages
Old Versions of Promoter Packages
Old Versions of Genome Packages

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu